The institute consists of departments:
- Sector of Amyloid Research
- Department of Protein - DNA Interactions
- Department of Bioinformatics
- Department of Biothermodynamics and Drug Design
- Department of Biological DNA Modification
- Laboratory of Epigenomic Research
- Department of Eukaryote Gene Engineering
- Department of Immunology
- Sector of Crystallography and Chemical Informatics
- Department of Single Cell Analytics
- Sector of Applied Biocatalysis